Compilation failed for package biobase
WebHi Jenny -- Probably in Windows you want to go to Start --> Settings --> Control Panel --> System --> Advanced --> Environment variables and create a new 'User' variable called … WebThe text was updated successfully, but these errors were encountered:
Compilation failed for package biobase
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WebTrouble Installing Bioconductor Basic Packages. I am using R version 3.4.4 and Bioconductor version 3.6 with BiocInstaller version 1.28.0 on a Virtual Machine with Windows 7 as the host OS and Linux Mint 19 as the guest OS using VirtualBox version 4.3.12. When I try to install the basic BioConductor Packages with biocLite (), the … WebBiobase: Base functions for Bioconductor. Bioconductor version: Release (3.16) Functions that are needed by many other packages or which replace R functions. Author: R. …
Webthere is no package called ‘Biobase’ Error: package or namespace load failed for ‘DESeq2’ ... WebNov 23, 2024 · This seems to actually be a problem with a dependency of drc - in particular, attempting to do any of the following results in errors: install.packages ("car") install.packages ("drc") In both cases, it ends up being that readr is failing. installing source package ‘readr’ ... ** package ‘readr’ successfully unpacked and MD5 sums checked.
WebJul 24, 2013 · Previous message: [BioC] ERROR: compilation failed for package XVector Next message: [BioC] ERROR: compilation failed for package XVector Messages sorted by: Hi Herve, I did have tested using biocLite() method to install XVector. ... base >> >> other attached packages: >> [1] Biobase_2.20.0 IRanges_1.18.0 BiocGenerics_0.6.0 … package ‘forecast’ is available as a source package but not as a binary Warning in install.packages : package ‘forecast’ is not available (for R version 3.1.0) I actually had R 3.1.0 and both forecast and hts working together prior to the reinstall so I suspect the problem stems from something I've done, rather than a compatibility problem.
WebBioconductor version: Release (3.16) Dirichlet-multinomial mixture models can be used to describe variability in microbial metagenomic data. This package is an interface to code originally made available by Holmes, Harris, and Quince, 2012, PLoS ONE 7 (2): 1-15, as discussed further in the man page for this package, ?DirichletMultinomial.
WebPart of R Language Collective Collective. 8. I need to install different packages on R. The OS is ubuntu for windows. When I try "BiocManager::install ("Biobase") I get the … church of god baltimore marylandWebFeb 14, 2024 · While it seems to be a simple repository specification problem. So I tried changing the repos: options (repos = BiocManager::repositories ()) which didn't help, then I tried: setRepositories () and choose the "BioC software" and it doesn't help either. Then I found Seurat is even not a bioconductor package and should be found with r CRAN. dewalt shelving unitWebJan 10, 2024 · I am writing because I have not been able to install GO.db. I have tried several times with and without updating old packages, and installing updates "from the source the packages need compilation" and not installing updates from source. I keep getting similar errors. Below is the code: church of god baton rouge laWebFeb 13, 2024 · The first thing to note is that this isn't a problem with DESeq2. The message ERROR: dependency ‘RcppArmadillo’ is not available for package ‘DESeq2’ tells you that the reason DESeq2 isn't being installed is because RcppArmadillo isn't available. So you really want to focus on sorting that out first, and hopefully installation of DESeq2 ... dewalt shoes warrantyWebAug 7, 2024 · Warning in install.packages : * installation of package ‘rgdal’ had non-zero exit status So this is the rather cryptic line that tells you that package installation has failed (exit status = 0 means success). Looking up a few lines, the reason seems to be that there's a problem with the PROJ installation: church of god barberton ohioWebOct 28, 2024 · amap: Another Multidimensional Analysis Package Tools for Clustering and Principal Component Analysis (With robust methods, and parallelized functions). Version: dewalt shelving 56829WebJan 28, 2024 · I've tried installing the following packages but have received the same error, "installation of package X had non-zero exit status". The packages include: broom, tidyr, tidyselect, vctrs, and rlang. I've examined documentation for broom and I didn't see anything saying that it explicitly is only supported by some previous version. church of god benefits board cleveland tn